panX is a software package for comprehensive pan-genome analysis and web-based interactive visualization and dynamic exploration.

It encompasses various interconnected viewers, allows rapid search via gene name, diversity, duplications, annotation, integrates strain-associated meta-data (collection data, country, resistance, etc.), gene presence/absence pattern, gene gain/loss event on phylogeny.

panX helps users to gain insights into bacterial genomic diversity and the dynamics of the accessory genes linked with habitat adaptation, antibiotic resistance, virulence, as well as epidemiological markers.


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Epidemiology of 616 Streptococcus pneumoniae strains

Croucher et al. (2015)

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Diverse Prochlorococcus genomes: gene gain/loss pattern

Biller et al. (2014)

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